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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015832359.1_cds_XP_016504877.1_18270
CDS Infomation

[gene=LOC107822820] [db_xref=GeneID:107822820] [protein=probable E3 ubiquitin-protein ligase HERC3] [protein_id=XP_016504877.1] [location=complement(join(1001..1309,1557..1664,1797..2165,5932..6042,7036..7245,8265..8603))] [gbkey=CDS]
Sequence

ATGGGGGATCGTTTGAGGTCAGCATCAATGGAGGATTTGCCAGTACATTTGATTCTTGAA
ATATTGACGTCAGGTCGATTAGGTGCTATTGATTTAATATGTTTGGAGCTAACTTCAAGG
ACTTTTAGGGGAACCCACTGTTTGGTTCCTCAAAAGTTTAAGTCTTTGGTTGATTATGCT
GTGTTTCAGCTTTGTTGGATGCATCCTTTTTATGCCTCTCTGCATTGTGATGCTCAGAAA
GAGCTTCTCGGACGCTGTAATGACAATTGGAAGCGCCTTTTGAGGTTCTTGCAAGGGTTG
GAACAGTCCTCTGATACGGTTGCAACCTCTGCAGGCAATATGCAAATTAGGAGTGGCAGG
TATCACACATTGCTAATCAAAGGATCAAAAGTATACTCTTGTGGTTCCAGTTTATCCGGC
GTGCTCGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCT
CTTCCTGTACAAGTCGCCCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGG
TCTGGACAGGTGTTCACATGTGGAGACAACTCTGCATACTGTTGTGGGCATATAGACACC
GGACGCCCAATCTTCAGGCCTAGGATGGTTGAAGCATTGAAAAACATTCGTTGCAAGCAG
GTTGCTGTAGGTCTCAGTTTTACCATGTTTCTCACAAGGCAAGGTCATGTTTACACATGT
GGAACAAATTCACTTGGTCAACTTGGTCATGGTGACACAATGGATAGGCCAACACCGACA
TGTGTAGAATTACTGGCATCTATGGGTTCTGTAGTTCAGATTGCTGCTGGTCCTAGTTAT
GCACTTGCAGTTTGTGATGATGGGACACTCTACTCTTTTGGTTCGGGTACTAATTTCTGC
CTTGGTCACGGAGAACAGCACAATGAACTTCAGCCACGTGCAATCCAGTCGTTTAGTAGG
CAGGGCATTTATGTGGCTCGTGTTTCTGCTGGCGCTGAGCATGTTGTGGCACTGGATTCC
ACTGGATATGTGTATACTTGGGGGAAAGGTTACTGTGGTGCATTGGGGCATGGAGATGAG
ATTGATAAGACGACTCCATCACTCTTGACCAGCCTTAAGAGCCAACTAGCTGTTCAGGTT
TGTGCAAGTAAGAGGAAAACTTTTGTCCTGGTGGAGGACGGTTCTGTTTATGGCTTTGGT
TGGATGGGTTTTGGTAGCCTCGGGTTCCTTGATAGAGGAGCATCAGATAAAGTTTTGAGG
CCCCGGATCCTCGAGAGTTTGAGATCTCACCACATATCTCAAATTAGCACTGGCTTATAC
CACACTGTTGTTGTCACAAATCGTGGACGGGTTTTTGGATTTGGAGACAATGAAAGAGCC
CAACTCGGGCATGATGCACTTAGGGGATGCCTTAAACCTACTGAAATCTTTATGGAAAAA
TCGTGA

Peptide Sequence

PEP ID

XP_016504877.1
PEP Infomation

PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Nicotiana tabacum]
Sequence

MGDRLRSASMEDLPVHLILEILTSGRLGAIDLICLELTSRTFRGTHCLVPQKFKSLVDYA
VFQLCWMHPFYASLHCDAQKELLGRCNDNWKRLLRFLQGLEQSSDTVATSAGNMQIRSGR
YHTLLIKGSKVYSCGSSLSGVLGHGPETTQCVEFTRISFPLPVQVAQVSASHNHAAFVTG
SGQVFTCGDNSAYCCGHIDTGRPIFRPRMVEALKNIRCKQVAVGLSFTMFLTRQGHVYTC
GTNSLGQLGHGDTMDRPTPTCVELLASMGSVVQIAAGPSYALAVCDDGTLYSFGSGTNFC
LGHGEQHNELQPRAIQSFSRQGIYVARVSAGAEHVVALDSTGYVYTWGKGYCGALGHGDE
IDKTTPSLLTSLKSQLAVQVCASKRKTFVLVEDGSVYGFGWMGFGSLGFLDRGASDKVLR
PRILESLRSHHISQISTGLYHTVVVTNRGRVFGFGDNERAQLGHDALRGCLKPTEIFMEK
S

Transcript Sequence

Gene sequence data has not been registered.